The cover is underneath the rear door (towards the end of the door) on the bottom floor. It's a black plastic. You can tap on it and if it moves, that's your problem. There is a psuhpin on the rear end ... you can either push it back in (which i doubt will solve the issue...it might come loose again) or remove it, clean the floor and the cover and apply some 3M tape. Push the whole thing back in....
I assume, the passenger side cover will start to rattle soon, too. Same concept, same pushpin issue... i will fix it, when i hear rattle from that side, too.
On the first picture, you can see some of the 3M tape to the left....
LEXiiON